PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04999.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 114aa    MW: 13089 Da    PI: 9.5401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04999.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.43.8e-08209441117
                      NAM  41 kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkge 117
                               +ePw++      +ek +yf s+    +++ k+ +r++ +g+Wk + +  ++++   ++ ++g k++L   ++++++ e
  Sme2.5_04999.1_g00005.1  20 GSEPWQII----DGEKTCYFLSRLTIFKNSTKKFSRTVGTGTWKGKARGSSICDVskNNVTIGYKRSLRIKEKKQKEEE 94 
                              47999995....467899*****999999999************99888888876547788*********977665544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-72192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MLQGVFPPTD FIKVKKVFGG SEPWQIIDGE KTCYFLSRLT IFKNSTKKFS RTVGTGTWKG  60
KARGSSICDV SKNNVTIGYK RSLRIKEKKQ KEEENDDNKE VMEEEVDELI NHLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549492.12e-33PREDICTED: NAC domain-containing protein 78-like
TrEMBLM1A3R26e-14M1A3R2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000141022e-13(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385